PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf11578g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 166aa    MW: 18896.3 Da    PI: 9.1931
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf11578g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.8e-212384157
                              TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              ++ R+++t+eq+++L +lF++  r+ps++++++++++l    +++ ++V++WFqN++a+e++
  Peinf101Scf11578g00004.1 23 KCGRWNPTSEQVKVLTDLFRSgLRTPSTDQIQKISSQLsfygKIESKNVFYWFQNHKARERQ 84
                              568*****************99**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.0462085IPR001356Homeobox domain
SMARTSM003892.9E-42289IPR001356Homeobox domain
PfamPF000464.4E-182484IPR001356Homeobox domain
SuperFamilySSF466895.99E-122587IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-82684IPR009057Homeodomain-like
CDDcd000862.39E-42686No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010078Biological Processmaintenance of root meristem identity
GO:1902459Biological Processpositive regulation of stem cell population maintenance
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEEGMAGFSV RARGGGGGGG GTKCGRWNPT SEQVKVLTDL FRSGLRTPST DQIQKISSQL  60
SFYGKIESKN VFYWFQNHKA RERQKRRRVL VDEPKEINNN YYNLEVSEQQ ERVKETLQLF  120
PLNSFSVSES EKLRFFAEAC KENTAFSCNI GAEMGHPTLD LRLSFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18488KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783476.14e-90PREDICTED: WUSCHEL-related homeobox 5-like
SwissprotQ8H1D25e-61WOX5_ARATH; WUSCHEL-related homeobox 5
TrEMBLM5XSQ71e-73M5XSQ7_PRUPE; Uncharacterized protein
STRINGGLYMA18G03350.14e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122011922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.12e-57WUSCHEL related homeobox 5